Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015879985.1_cds_XP_016437369.1_33136
CDS Infomation

[gene=LOC107763389] [db_xref=GeneID:107763389] [protein=probable pectate lyase 5] [protein_id=XP_016437369.1] [location=join(82759..82871,83251..83887,84311..84414,84510..84648,86414..86635)] [gbkey=CDS]
Sequence

ATGGGAATACCAATTATCTTCCTTCTCCTTCTTGCTCTTTTAGCTCCTCTCTTCACGTTC
TCAACGTCTGTGGCTGTTCCTGACCCTGAAGTTATAGTCCAACAAGTTAACGACAAAATT
TTCAATGCATCAAGAAGGAACTTAGGCTATTTATCATGTGGAACAGGCAACCCCATTGAT
GATTGCTGGAGATGTGACCCCAATTGGGAAAAAAACAGGCAAAGATTAGCTGATTGTGCC
ATTGGATTTGGCAAACAAGCCATTGGTGGAAGAGATGGCAAAATTTACATAGTCACTGAT
ACTAGTGATGACCCTGTAAATCCAAAGCCAGGAACTTTAAGATATGGTGCAATTCAAGAT
GAACCCCTTTGGATTATATTTGCAAGAGACATGGTTATTAAGCTAAAAGAAGAGTTAATT
TTGAATTCATTCAAGACAATTGATGGTAGAGGTGCTAGTGTACACATTGCTGGTGGTCCA
TGTATTACTATACAATATGTTACAAATATTATTATACATGGATTAAATATTCATGATTGT
AAACAAGGAGGAAATGCTTATGTTAGAGATTCACCAGAGCATTATGGTTGGAGGACATTA
TCAGATGGAGATGGAGTTTCTATATTTGGAGGAAGCCATGTTTGGGTTGATCATTGTTCT
TTGTCAAATTGTAGAGATGGGTTGATTGATGCAATTCGTGGATCTACTGCCATTACTATT
TCCAATAATTACATGACACATCATAATAAGGTAATGCTTTTGGGACATAGTGATTCATTC
ACTAGGGACAAGAACATGCAAGTTACCATTGCTTTTAACCATTTTGGAGAAGGGCTTGTA
CAAAGAATGCCAAGATGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACCCAT
TGGGAGATGTATGCAGTTGGAGGAAGTGCTTCTCCAACTATCAACAGCCAAGGCAATAGA
TTTCTTGCTCCTAATGATATCTTCAACAAGGAGGTGACAAAACATGAGGATGCAGCAGAA
AGTGAATGGAAGAATTGGAACTGGAGATCTGAAGGAGATTTAATGCTTAATGGAGCTTTT
TTTACTAGGTCTGGTGCTGGAGCTTCTAAAAGTTATGCTAAAGCTTCAAGTTTAAGTGCA
AGGCCATCTACTTTAGTTAGTTCTATTACTGTCAATGCTGGTGCACTTGGCTGCAAAAAG
GGCAAAAGATGCTGA

Peptide Sequence

PEP ID

XP_016437369.1
PEP Infomation

PREDICTED: probable pectate lyase 5 [Nicotiana tabacum]
Sequence

MGIPIIFLLLLALLAPLFTFSTSVAVPDPEVIVQQVNDKIFNASRRNLGYLSCGTGNPID
DCWRCDPNWEKNRQRLADCAIGFGKQAIGGRDGKIYIVTDTSDDPVNPKPGTLRYGAIQD
EPLWIIFARDMVIKLKEELILNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC
KQGGNAYVRDSPEHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITI
SNNYMTHHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTH
WEMYAVGGSASPTINSQGNRFLAPNDIFNKEVTKHEDAAESEWKNWNWRSEGDLMLNGAF
FTRSGAGASKSYAKASSLSARPSTLVSSITVNAGALGCKKGKRC

Transcript Sequence

Gene sequence data has not been registered.